PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 103aa    MW: 11419.2 Da    PI: 10.6046
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07010.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-121341247
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +++++  lG++ W++Ia++++ gRt++++k++w+++
        PK07010.1  1 IIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 34
                     5899*******.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0019137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-18136IPR009057Homeodomain-like
SuperFamilySSF466896.32E-11144IPR009057Homeodomain-like
PfamPF002494.9E-11134IPR001005SANT/Myb domain
PROSITE profilePS5129420.564139IPR017930Myb domain
CDDcd001671.36E-9135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
IIQLHSVLGN KWSAIAARLP GRTDNEIKNY WNTHIRKRLL RMGIDPVTHA PRLDFLDLSS  60
ILAANSSSFC NPSLLNLSSL LGSTQPLFNP ELLRLASTVL SLN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095853.18e-54Transcription factor
RefseqXP_015881000.11e-53PREDICTED: transcription factor MYB39-like
SwissprotQ8GWP06e-28MYB39_ARATH; Transcription factor MYB39
TrEMBLW9R0B69e-54W9R0B6_9R
STRINGPOPTR_0019s14070.19e-48(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1689547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-41MYB-like 102